CircolettoAn idea that originated from intra-Institute experiences (as was the name actually), and based on Circos, Circoletto visualises sequence similarity from BLAST results (which you can either create through Circoletto, or upload your own). [server] | [citation] | [code] |
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ARResT/InterrogateWeb-based, interactive application for immunoprofiling IG/TR sequence data, both NGS and Sanger. It can process, analyse, organize and filter large amounts of data by numerous criteria and their combinations, based on user-provided arbitrary metadata, and present them in the form of several interactive visualizations. |
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ARResT/AssignSubsetsARResT/AssignSubsets was built to robustly assign user-submitted sequences as new members to existing subsets of stereotyped antigen receptor sequences, currently applicable to the 19 major subsets of stereotyped B-cell receptors in chronic lymphocytic leukemia (CLL), through sets of rules captured in a statistical model. That implies that ARResT/AssignSubsets does not discover new subsets. |
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ARResT/SeqCure
ARResT/SeqCure is able to systematically and consistently capture, describe, and advise on issues with the input antigen receptor sequences based on an easily expandable knowledgebase and set of rules.
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GLASSAssisted and standardized assessment of gene aberrations from Sanger sequence trace data. A collaboration between us, the Medical Genomics Group @ CEITEC MU, the European Research Initiative on CLL / ERIC, and the IgCLL group. |
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